MicroRNAs: regulators of oncogenesis and stemness
© Papagiannakopoulos and Kosik; licensee BioMed Central Ltd. 2008
Received: 19 March 2008
Accepted: 24 June 2008
Published: 24 June 2008
MicroRNAs (miRNAs) are essential post-transcriptional regulators that determine cell identity and fate. Aberrant expression of miRNAs can lead to diseases, including cancer. Expression of many miRNAs in the de-differentiated brain tumor cancer stem cells resembles that of neural stem cells. In this issue of BMC Medicine, Silber et al provide evidence of the expression of such miRNAs and their potential to mediate differentiation in both stem cell populations. In this commentary, we discuss the known functions of miRNAs in cancer and stem cells, their therapeutic potential and how the findings of Silber et al provide insight into the role of miR-124/miR-137 dysregulation in glioblastomas.
MicroRNA biogenesis and function
miRNAs act on cellular transcripts by two different mechanisms. The first mechanism is cleavage-dependent RNA degradation of the transcript at the site where the miRNA binds. The other mechanism is miRNA-mediated translational repression of the target transcript, while the miRNA binds to the target 3'-UTR with several mismatches. This partial complementarity allows for miRNAs to target multiple 3'-UTRs . A key question that arises from the targeting of multiple transcripts is whether there has been evolutionary enrichment in targets that are involved in similar cellular functions.
miRNAs in cancer
Aberrant expression of miRNA genes can lead to human diseases, including cancer. In recent years, a number of informative profiling studies have determined the levels of miRNAs in various types of cancer cell lines and tumors . Most of these studies have identified multiple dysregulated miRNAs, which in many cases can classify cancer types . In addition, multiple functional studies on tumor suppressive or oncogenic miRNAs were identified from profiling, screens or due to their cancer-associated genomic loci [2, 3].
The first tumor suppressive miRNAs identified were the miR-15/miR-16 cluster, located in a genomic region of chr13, which is often deleted in chronic lymphocytic leukemias (CLLs). Therefore, these two miRNAs are not expressed in CLLs, leading to increased levels of an oncogenic target, the apoptotic inhibitor Bcl-2 .
The first functional evidence of a miRNA, or a non-coding RNA, acting as a mammalian 'oncogene' or 'onco-miR' was the miR-17–92 polycistron. Enforced expression of this 'onco-miR' was shown to act with c-Myc to accelerate tumor development in a mouse B-cell lymphoma model . c-Myc, which is a well-studied oncogene, activates the expression of miR-17–92 through its direct interaction with the putative promoter region. This finding could explain the high expression levels of the miRNA cluster in lung, breast, stomach, prostate, colon and pancreatic cancers where it potentially plays a similar oncogenic role [2, 5]. miRNAs from this cluster target tumor suppressor genes such as E2F1, PTEN and TGFβRII [2, 5].
Gliomas are the most common primary tumors in the brain and are divided into four clinical grades on the basis of their histology and prognosis. Grade IV Glioblastomas are the most malignant of all brain tumors and are almost always fatal [6, 7]. Profiling of glioblastoma tumors and cell lines has revealed increased levels of miR-21 . In the same study, inhibition of miR-21 in glioblastoma cells led to increased cell death, suggesting that miR-21 could be acting as an oncogene to inhibit cell death in glioblastomas. Subsequent cancer profiling studies also reported increased levels of miR-21 in most types of cancer where miR-21 had the same anti-apoptotic role . Recently, a study determined that miR-21 knockdown in glioblastoma cells significantly repressed the ability of these cells to form tumors in an in vivo mouse xenograft model .
In this issue of BMC Medicine, a study by Silber et al demonstrates that two miRNAs, miR-124 and miR-137, are significantly decreased in anaplastic astrocytomas (AA, WHO grade III) and glioblatoma multiforme (GBM, WHO grade IV) relative to non-neoplastic brain tissue. In addition to the profiling performed in this study, in situ hybridization experiments would be helpful to determine the exact cell populations in which miR-124 and miR-137 are dysregulated. When these miRNAs were overexpressed in glioblastoma cell lines, they led to G1 cell cycle arrest by repression of Retinoblastoma (RB) and CDK6. Downregulation of CDK6 occurs partially through direct targeting by miR-137. This is a significant tumor suppressive potential of these two miRNAs by repressing cell cycle progression and thus the growth of GBM cells.
microRNAs in cancer stem cells
Chen et al were the first to suggest that embryonic stem cells (ESCs), embryoid bodies, and day 11 mouse embryos exhibit a less complex miRNA profile than more mature somatic tissues. They hypothesized that the degree of cellular or tissue differentiation can be characterized by a particular miRNA signature . The obvious parallel that can be drawn is that undifferentiated stem cells display miRNA expression profiles reminiscent of cancer cells. Numerous known oncogenic miRNAs are expressed in early stages of development in undifferentiated cells; however, their expression decreases in differentiated tissue, whereas the opposite holds true for tumor suppressive miRNAs.
In recent years, there has been a sudden increase in studies on a subpopulation of cells in tumors that have stem cell properties, cancer stem cells (CSCs). The CSC hypothesis proposes that cancers are derived from a small fraction of cancer cells that constitute a reservoir of self-sustaining cells with the exclusive ability to self-renew and maintain the tumor. Small numbers of CSCs are sufficient to form orthotopic tumors in vivo. Cells which could be described as CSCs have been isolated from hematological malignancies, brain, breast and colon tumors [6, 7, 11–13].
GBM-derived CSCs share the fundamental stem cell properties of self-renewal and multi-potency with neural stem cells (NSCs). They were first isolated from tumors by virtue of the expression of CD133 that marks NSCs and neural progenitor cells (NPCs) [6, 7]. Microarray studies have since revealed considerable overlap between the gene-expression signatures of glioblastomas and progenitor cells of the developing forebrain. Forced differentiation of CD133+ cells with BMP4 addition abrogates their stem cell phenotypes, making this a potential therapeutic approach for eliminating this subpopulation of GBMs .
Treatment of GBM tumors with current methods has proven largely unsuccessful. To a great extent this is because of the ineffectiveness of current therapeutics to target the CSC population of GBM tumors. This study indicates a new approach targeting the CSC subpopulation of tumors by overexpressing microRNAs which are normally expressed in the surrounding differentiated tissue. Upregulation of miR-124 and miR-137 could have therapeutic use in blocking this CSC subpopulation of GBM tumors. Modulation of GBM tumor dysregulated miRNAs such as miR-21 and miR-124/miR-137 by RNAi-based therapeutics, in conjunction with current treatments may prove a key approach in the fight against these deadly tumors.
Development of miRNA/RNAi-based therapeutics requires several critical experimental steps, which include: (1) miRNA profiling of cancer versus healthy tissue, (2) functional analysis of dyregulated miRNAs, and (3) in vivo studies with use of different RNAi-based therapeutic methods to dysregulate miRNAs. Silber et al have performed the two initial steps for miR-124/miR-137 as therapeutic targets in GBMs. A major caveat in RNAi-based therapeutics has been their in vivo targeting to the brain and particularly crossing of the blood brain barrier . This problem can be overcome with the use of lipid encapsulation, direct administration of the therapeutics to the brain tumor or development of safe gene therapy approaches using viral delivery . In the dawn of miRNA research, there is confidence that RNAi can be successfully maintained in vivo in a tumor-specific manner for prolonged clinical efficacy. The success of such strategies for gene therapy will provide clinicians with a larger repertoire that includes miRNA-therapeutic agents, which can be used in parallel with currently available drugs.
- Filipowicz W, Bhattacharyya SN, Sonenberg N: Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nat Rev Genet. 2008, 9: 102-114. 10.1038/nrg2290.View ArticlePubMedGoogle Scholar
- Calin GA, Croce CM: MicroRNA signatures in human cancers. Nat Rev Cancer. 2006, 6: 857-866. 10.1038/nrc1997.View ArticlePubMedGoogle Scholar
- Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D, Sweet-Cordero A, Ebert BL, Mak RH, Ferrando AA, Downing JR, Jacks T, Horvitz HR, Golub TR: MicroRNA expression profiles classify human cancers. Nature. 2005, 435: 834-838. 10.1038/nature03702.View ArticlePubMedGoogle Scholar
- He L, Thomson JM, Hemann MT, Hernando-Monge E, Mu D, Goodson S, Powers S, Cordon-Cardo C, Lowe SW, Hannon GJ, Hammond SM: A microRNA polycistron as a potential human oncogene. Nature. 2005, 435: 828-833. 10.1038/nature03552.View ArticlePubMedPubMed CentralGoogle Scholar
- O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT: c-Myc-regulated microRNAs modulate E2F1 expression. Nature. 2005, 435: 839-843. 10.1038/nature03677.View ArticlePubMedGoogle Scholar
- Gilbertson RJ, Rich JN: Making a tumour's bed: glioblastoma stem cells and the vascular niche. Nat Rev Cancer. 2007, 7: 733-736. 10.1038/nrc2246.View ArticlePubMedGoogle Scholar
- Vescovi AL, Galli R, Reynolds BA: Brain tumour stem cells. Nat Rev Cancer. 2006, 6: 425-436. 10.1038/nrc1889.View ArticlePubMedGoogle Scholar
- Chan JA, Krichevsky AM, Kosik KS: MicroRNA-21 Is an Antiapoptotic Factor in Human Glioblastoma Cells. Cancer Res. 2005, 65: 6029-6033. 10.1158/0008-5472.CAN-05-0137.View ArticlePubMedGoogle Scholar
- Corsten MF, Miranda R, Kasmieh R, Krichevsky AM, Weissleder R, Shah K: MicroRNA-21 Knockdown Disrupts Glioma Growth In vivo and Displays Synergistic Cytotoxicity with Neural Precursor Cell Delivered S-TRAIL in Human Gliomas. Cancer Res. 2007, 67: 8994-9000. 10.1158/0008-5472.CAN-07-1045.View ArticlePubMedGoogle Scholar
- Chen C, Ridzon D, Lee C-T, Blake J, Sun Y, Strauss W: Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets. Mammalian Genome. 2007, 18: 316-327. 10.1007/s00335-007-9032-6.View ArticlePubMedGoogle Scholar
- Ricci-Vitiani L, Lombardi DG, Pilozzi E, Biffoni M, Todaro M, Peschle C, De Maria R: Identification and expansion of human colon-cancer-initiating cells. Nature. 2007, 445: 111-115. 10.1038/nature05384.View ArticlePubMedGoogle Scholar
- Stingl J, Caldas C: Molecular heterogeneity of breast carcinomas and the cancer stem cell hypothesis. Nat Rev Cancer. 2007, 7: 791-799. 10.1038/nrc2212.View ArticlePubMedGoogle Scholar
- Huntly BJP, Gilliland DG: Leukaemia stem cells and the evolution of cancer-stem-cell research. Nat Rev Cancer. 2005, 5: 311-321. 10.1038/nrc1592.View ArticlePubMedGoogle Scholar
- Krichevsky AM, King KS, Donahue CP, Khrapko K, Kosik KS: A microRNA array reveals extensive regulation of microRNAs during brain development. RNA. 2003, 9: 1274-1281. 10.1261/rna.5980303.View ArticlePubMedPubMed CentralGoogle Scholar
- Pardridge WM: shRNA and siRNA delivery to the brain. Advanced Drug Delivery Reviews. 2007, 59: 141-152. 10.1016/j.addr.2007.03.008.View ArticlePubMedPubMed CentralGoogle Scholar
- The pre-publication history for this paper can be accessed here:http://0-www.biomedcentral.com.brum.beds.ac.uk/1741-7015/6/15/prepub
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